Cancer, cloud and privacy shield

February 23, 2016 / G C Network / Comments Off on Cancer, cloud and privacy shield

SOA-R!! Another Hit !!

By G C Network | October 9, 2008

Yesterday’s SOA-R event coverage by TECH Bisnow Washington was yet another indication that cloud computing is real in the Federal space. Thanks goes to Mr. Dave Stegon from Bisnow on Business and Pauline Healy from Apptis.  Thanks…

World Summit of Cloud Computing, December 1-2, 2008, Wohl Centre, Ramat Gan, Israel

By G C Network | October 8, 2008

I am proud to announce that I’ve been invited to speak at the “World Summit of Cloud Computing“, December 1-2, 2008, at the Wohl Centre in Ramat Gan, Israel. As…

MIT Survey: What A Response !!

By G C Network | October 7, 2008

We’ve been quite surprised by the number of survey responses we’ve received.  THANK YOU !!  That subset of the cloud computing community interested in national security and public sector applications…

Cloud Auction Business Model

By G C Network | October 3, 2008

The other day I talked about how cloud computing could change the government’s budgeting process. Well what about this! Last week, Google filed a patent application that describes a system…

Oracle: To Cloud or Not To Cloud …

By G C Network | October 2, 2008

First Oracle’s Larry Ellison bashes cloud computing as nothing but hype and then his company announces that it will let customers run Oracle 10g and 11g databases and its Fusion…

Capacity planning in a cloud environment

By G C Network | October 1, 2008

In her post “Cloud computing killed the capacity star“, Ivanka Menken brings up some good points. Just think what changes this could bring to the government budgeting process. The trends…

Cloud Databases

By G C Network | September 30, 2008

Joab Jackson, in his “Cloud computing leaving relational databases behind” article, makes some pretty interesting points on the incompatibility of relational databases with cloud-based infrastructures. He first list the various…

The 6 layers of the Cloud Computing Stack

By G C Network | September 29, 2008

From Sam Johnston’s Taxonomy post Clients (examples) are computer hardware and/or computer software which rely on The Cloud for application delivery, or which is specifically designed for delivery of cloud…

Thank You KMI Media Group

By G C Network | September 26, 2008

In this month’s Editor’s Perspective, Mr. Harrison Donnelly announced the new KMI Media Group collaborative effort. Military Information Technology will be using the blogosphere to get their government and industry…

VMware, Cisco and the Virtual Datacenter

By G C Network | September 26, 2008

Last week, VMware and Cisco announced their latest collaboration for the virtual datacenter of the future. The Cisco Nexus® 1000V distributed virtual software switch is expected to be an integrated…


(Originally published in Dell PowerMore)

For more than 10 years, the rapid rise of cloud computing has enabled an even more rapid application of cloud to genomic medicine. In fact, since the U.S. National Institutes of Health (NIH) lifted a 2007 ban on uploading their genomic data into cloud storage, the explosion in cloud use has accelerated. Some of the most impressive accomplishments in this field have included the:
• Pan-Cancer Analysis of Whole Genomes (PCAWG) project, that brings together whole-genome sequencing data from the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA) projects. This resource describes over 2000 tumor and matched control samples that cover more than 30 cancer entities. Academics will be using the EMBL-EBI Embassy Cloud and high-performance computing centers at the University of Chicago, the Electronics and Telecommunications Research Institute in Seoul, the University of California in Santa Cruz, the University of Tokyo and the Heidelberg Center for Personalized Oncology at the German Cancer Research Centre (DKFZ) (https://news.embl.de/science/1507-genome-cloud/);
• 100,000 Genomes Project in the United Kingdom includes genomic data from 70,000 people including National Health Service patients with a rare disease, plus their families, and patients with cancer;
• Phoenix, Arizona-based Translational Genomics Research Institute (TGen) and the Neuroblastoma and Medulloblastoma Translational Research Consortium on personalized medicine trials which uses high-performance computing in the cloud to sequence tumor samples to create new treatment database that help determine personalized drug therapy approaches for children. The project is also being expanded to pediatric cancer clinical trials in EMEA, starting with sites in France and Lebanon.
“Cloud Powered Genomics” brings with it:
• Speed. The time it takes to process the required 90 billion data points is reduced from 10 days to 6 hours or less



• Precision. The analysis of multiple terabytes of data now enables an ability for doctors to prescribe treatments that are fully matched to the individual patient instead of relying on treatments designed for a broad base of patients.
• Collaboration. Researchers and doctors worldwide can now share diagnostic and case information while drawing on an existing storehouse of massive medical knowledge which, in turn, helps improve outcomes and refines treatment protocols.
• Scalability. Storage and processing capacity grow over time as vast amounts of data are collected.

While cloud computing enables researchers and doctors to cost effectively analyze the enormous amount of data necessary to produce these insights at a rapid rate, the privacy issues raised are also daunting. Last year’snullification of Safe Harbor by the European Courts brings these issues to the forefront.
Even without announcing specific details, the European Commission announced a new framework for governing the flow of data across the Atlantic Ocean. Referred to as “Privacy Shield”, the agreement is meant to be a reflection of the requirements set out by the European Court of Justice in its ruling on 6 October 2015, which declared the old Safe Harbour framework invalid.
“The new arrangement will provide stronger obligations on companies in the U.S. to protect the personal data of Europeans and stronger monitoring and enforcement by the U.S. Department of Commerce and Federal Trade Commission (FTC), including through increased cooperation with European Data Protection Authorities. The new arrangement includes commitments by the U.S. that possibilities under U.S. law for public authorities to access personal data transferred under the new arrangement will be subject to clear conditions, limitations and oversight, preventing generalised access. Europeans will have the possibility to raise any enquiry or complaint in this context with a dedicated new Ombudsperson.”
Specific elements highlighted by the EC include:
• “Strong obligations” and “robust enforcement” on companies that handle Europeans’ personal data
• The U.S. Department of Commerce will monitoring of company published commitments to “Privacy Shield” that make the commitments enforceable under U.S. law by the FTC.
• Applicability to companies that handle human resources data from Europe.
• “Clear safeguards and transparency obligations” on U.S. government agencies’ access to data,
• Written assurances from the United States that access will be subject to “clear limitations, safeguards and oversight mechanisms”.
While the agreement has been lauded by many, its effect on the use of cloud computing on trans-Atlantic genomic research is still questionable. This new development will certainly introduce uncertainty and doubt into the business side of this important and burgeoning industry. We can only hope that any unintended circumstance don’t hinder this important medical progress.

( This post was written as part of the Dell Insight Partners program, which provides news and analysis about the evolving world of tech. Dell sponsored this article, but the opinions are my own and don’t necessarily represent Dell’s positions or strategies.)

Cloud Musings

( Thank you. If you enjoyed this article, get free updates by email or RSS – © Copyright Kevin L. Jackson 2015)

Follow me at https://Twitter.com/Kevin_Jackson
Posted in

G C Network

Cloud Computing

Cybersecurity